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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MetaPhOR" in publications use:'
type: software
license: Artistic-2.0
title: 'MetaPhOR: Metabolic Pathway Analysis of RNA'
version: 1.7.0
abstract: 'MetaPhOR was developed to enable users to assess metabolic dysregulation
  using transcriptomic-level data (RNA-sequencing and Microarray data) and produce
  publication-quality figures. A list of differentially expressed genes (DEGs), which
  includes fold change and p value, from DESeq2 or limma, can be used as input, with
  sample size for MetaPhOR, and will produce a data frame of scores for each KEGG
  pathway. These scores represent the magnitude and direction of transcriptional change
  within the pathway, along with estimated p-values.MetaPhOR then uses these scores
  to visualize metabolic profiles within and between samples through a variety of
  mechanisms, including: bubble plots, heatmaps, and pathway models.'
authors:
- family-names: Isenhart
  given-names: Emily
  email: emily.isenhart@roswellpark.org
- family-names: Rosario
  given-names: Spencer
repository: https://bioc.r-universe.dev
contact:
- family-names: Isenhart
  given-names: Emily
  email: emily.isenhart@roswellpark.org