To cite the MSstatsTMT package in publications use:

Huang, T., Choi, M., Tzouros, M., Golling, S., Pandya, N.J., Banfai, B., Dunkley, T. and Vitek, O. MSstatsTMT: Statistical detection of differentially abundant proteins in experiments with isobaric labeling and multiple mixtures. Molecular & Cellular Proteomics (2020), 19(10), 1706-1723.

Corresponding BibTeX entry:

  @Article{,
    title = {MSstatsTMT: Statistical detection of differentially
      abundant proteins in experiments with isobaric labeling and
      multiple mixtures},
    author = {Ting Huang and Meena Choi and Manuel Tzouros and Sabrina
      Golling and Nikhil Janak Pandya and Balazs Banfai and Tom Dunkley
      and Olga Vitek},
    journal = {Molecular & Cellular Proteomics},
    volume = {19},
    number = {10},
    pages = {1706-1723},
    year = {2020},
  }