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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MSstatsPTM" in publications use:'
type: software
license: Artistic-2.0
title: 'MSstatsPTM: Statistical Characterization of Post-translational Modifications'
version: 2.7.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MSstatsPTM
abstract: MSstatsPTM provides general statistical methods for quantitative characterization
  of post-translational modifications (PTMs). Supports DDA, DIA, SRM, and tandem mass
  tag (TMT) labeling. Typically, the analysis involves the quantification of PTM sites
  (i.e., modified residues) and their corresponding proteins, as well as the integration
  of the quantification results. MSstatsPTM provides functions for summarization,
  estimation of PTM site abundance, and detection of changes in PTMs across experimental
  conditions.
authors:
- family-names: Kohler
  given-names: Devon
  email: kohler.d@northeastern.edu
- family-names: Tsai
  given-names: Tsung-Heng
  email: tsai.tsungheng@gmail.com
- family-names: Huang
  given-names: Ting
  email: thuang0703@gmail.com
- family-names: Staniak
  given-names: Mateusz
  email: mtst@mstaniak.pl
- family-names: Choi
  given-names: Meena
  email: mnchoi67@gmail.com
- family-names: Vitek
  given-names: Olga
  email: o.vitek@northeastern.edu
preferred-citation:
  type: article
  title: 'MSstatsPTM: Statistical relative quantification of post-translational modifications
    in bottom-up mass spectrometry-based proteomics'
  authors:
  - family-names: Kohler
    given-names: Devon
    email: kohler.d@northeastern.edu
  - family-names: Tsai
    given-names: Tsung-Heng
    email: tsai.tsungheng@gmail.com
  - family-names: Verschueren
    given-names: Erik
    email: erik.verschueren@gmail.com
  - family-names: Huang
    given-names: Ting
    email: thuang0703@gmail.com
  - family-names: Hinkle
    given-names: Trent
    email: hinkle.trent@gene.com
  - family-names: Phu
    given-names: Lilian
    email: phu.lilian@gene.com
  - family-names: Choi
    given-names: Meena
    email: mnchoi67@gmail.com
  - family-names: Vitek
    given-names: Olga
    email: o.vitek@northeastern.edu
  journal: Molecular and Cellular Proteomics
  volume: '100477'
  year: '2022'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Vitek-Lab/MSstatsPTM
commit: df6e85644a2d5041528c8cf0b152385283717d3d
url: https://github.com/Vitek-Lab/MSstatsPTM
date-released: '2024-04-24'
contact:
- family-names: Kohler
  given-names: Devon
  email: kohler.d@northeastern.edu