Changes in version 1.18.1                        

    o   Improved protein inference. Now it has two options - either unique peptide or
	with razor.

                       Changes in version 1.17.1                        

    o   Broadened the scope of the tool to ImmunoOncology - that is finding rare
	events that reflected in protein sequence.

                       Changes in version 1.15.1                        

    o   mzR now added scan number(s) into the table representation of
	mzIdentML object. As a results it caused an error in my unit test
	checking if the file reads properly. Fixed this check with updated hash.

                       Changes in version 1.11.1                        

    o   Switch from mclapply to parLapply in filter optimizaition.
	This fixes a bug 
	"Assertion failure at kmp_runtime.cpp(6480): __kmp_thread_pool == __null."
	Also allows to run parallel on Window OS

                        Changes in version 1.7.3                        

    o   Logical error fix in PSM FDR calculation. Prior it ignored redundancy
	in peptide to protein mapping. Now protein accession are discarded
	and unique rows considered before compuring the FDR.

    o   Added unit test to cover new PSM FDR calculation.

                        Changes in version 1.7.2                        

    o   added high performance parser based on mzR::openIDFile

                        Changes in version 1.7.1                        

    o   added infer_parsimonious_accessions method

    o   version leap from 1.3.1 to 1.7.1 to catch up with Bioconductor

    o   fixed conflict between reshape2 and data.table

                        Changes in version 1.3.1                        

    o   S4 methods "accessions" and "proteins" outsourced to ProtGenerics

                        Changes in version 1.1.6                        

    o   Added explicit mc.cores argument for "Grid" type of 
	 optimization

    o   Fix of trimming to basename on POSIX

                        Changes in version 1.1.5                        

    o   Always trimming spectrumFile and databaseFile to basename
	 after reading data from mzIdentML files.

                        Changes in version 1.1.4                        

    o   Catching up with changes in mzID package version 1.5.3

                        Changes in version 1.1.3                        

    o   Updated data, documentation and unit test to reflect the
	 latest changes in mzID

                        Changes in version 1.1.2                        

    o   id_quality and evaluate_filter may have multiple values for
	 the level argument. By default it is all three:
	 "PSM", "peptide" and "accession". The return value for
	 both methods is switched to matrices.

    o   added Laurent Gatto as a contributor

                        Changes in version 1.1.1                        

    o   fix mishandling PSM

    o   use mzR::psms generic

                        Changes in version 1.1.0                        

    o   Bumping versions after creating 3.0 release branch.

                       Changes in version 0.99.3                        

    o   Rcpp back into "Depends"

                       Changes in version 0.99.2                        

    o   Updated Rcpp dependency

    o   Updated contact info to match the bioc-devel mailing list

                       Changes in version 0.99.1                        

    o   Updated dependency on mzID version

                       Changes in version 0.99.0                        

    o   Minor bug fixes

    o   Added unit tests for filter optimization and assessment of
	 non-tryptic and missed cleavages

    o   Version bump for Bioconductor submission

                        Changes in version 0.1.0                        

    o   First release version