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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MPRAnalyze" in publications use:'
type: software
license: GPL-3.0-only
title: 'MPRAnalyze: Statistical Analysis of MPRA data'
version: 1.23.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MPRAnalyze
abstract: MPRAnalyze provides statistical framework for the analysis of data generated
  by Massively Parallel Reporter Assays (MPRAs), used to directly measure enhancer
  activity. MPRAnalyze can be used for quantification of enhancer activity, classification
  of active enhancers and comparative analyses of enhancer activity between conditions.
  MPRAnalyze construct a nested pair of generalized linear models (GLMs) to relate
  the DNA and RNA observations, easily adjustable to various experimental designs
  and conditions, and provides a set of rigorous statistical testig schemes.
authors:
- family-names: Ashuach
  given-names: Tal
  email: tal_ashuach@berkeley.edu
- family-names: Fischer
  given-names: David S
  email: david.fischer@helmholtz-muenchen.de
preferred-citation:
  type: article
  title: 'MPRAnalyze: statistical framework for massively parallel reporter assays'
  authors:
  - family-names: Ashuach
    given-names: Tal
    email: tal_ashuach@berkeley.edu
  - family-names: Fischer
    given-names: David S.
  - family-names: Kreimer
    given-names: Anat
  - family-names: Ahituv
    given-names: Nadav
  - family-names: Yosef
    given-names: Nir
  journal: Genome Biology
  year: '2019'
  volume: '20'
  issue: '1'
  url: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1787-z
  start: '1'
  end: '17'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/YosefLab/MPRAnalyze
commit: ac38efcf5043844a471ec772f3b1365f2f302ea1
url: https://github.com/YosefLab/MPRAnalyze
contact:
- family-names: Ashuach
  given-names: Tal
  email: tal_ashuach@berkeley.edu