Package: MPRAnalyze
Type: Package
Title: Statistical Analysis of MPRA data
Version: 1.31.0
Authors@R: c(
	person('Tal', 'Ashuach', NULL, 'tal_ashuach@berkeley.edu', c('aut', 'cre')),
	person('David S', 'Fischer', NULL, 'david.fischer@helmholtz-muenchen.de', 'aut'),
    person('Anat', 'Kriemer', NULL, 'anat.kreimer@gmail.com', 'ctb'),
	person('Fabian', 'Theis', NULL, 'fabian.theis@helmholtz-muenchen.de', 'ctb'),
    person('Nir', 'Yosef', NULL, 'niryosef@berkeley.edu', 'ctb'))
Author: Tal Ashuach [aut, cre], David S Fischer [aut], Anat Kriemer
        [ctb], Fabian J Theis [ctb], Nir Yosef [ctb],
Maintainer: Tal Ashuach <tal_ashuach@berkeley.edu>
Description: MPRAnalyze provides statistical framework for the analysis
        of data generated by Massively Parallel Reporter Assays
        (MPRAs), used to directly measure enhancer activity. MPRAnalyze
        can be used for quantification of enhancer activity,
        classification of active enhancers and comparative analyses of
        enhancer activity between conditions. MPRAnalyze construct a
        nested pair of generalized linear models (GLMs) to relate the
        DNA and RNA observations, easily adjustable to various
        experimental designs and conditions, and provides a set of
        rigorous statistical testig schemes.
License: GPL-3
Encoding: UTF-8
Imports: BiocParallel, methods, progress, stats, SummarizedExperiment
biocViews: ImmunoOncology, Software, StatisticalMethod, Sequencing,
        GeneExpression, CellBiology, CellBasedAssays,
        DifferentialExpression, ExperimentalDesign, Classification
Suggests: knitr
ByteCompile: true
BugReports: https://github.com/YosefLab/MPRAnalyze
URL: https://github.com/YosefLab/MPRAnalyze
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:48:51 UTC
RemoteUrl: https://github.com/bioc/MPRAnalyze
RemoteRef: HEAD
RemoteSha: cd479d72eef454ef3deb08d414f53aeecf92b1f4
NeedsCompilation: no
Packaged: 2026-07-04 22:51:45 UTC; root