To cite package ‘MOFA2’ in publications use:

  Argelaguet, Velten, Arnol, Dietrich, Zenz, Marioni, Buettner, Huber
  and Stegle: Multi‐Omics Factor Analysis — a framework for
  unsupervised integration of multi‐omics data sets. Mol Syst Biol
  (2018)14:e8124

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets},
    author = {Ricard Argelaguet and Britta Velten and Damien Arnol and Sascha Dietrich and Thorsten Zenz and John C Marioni and Florian Buettner and Wolfgang Huber and Oliver Stegle},
    year = {2018},
    journal = {Molecular Systems Biology},
    doi = {10.15252/msb.20178124},
    volume = {14},
  }

  Argelaguet, Arnol, Bredikhin, Deloro, Velten, Marioni,and Stegle:
  MOFA+: a statistical framework for comprehensive integration of
  multi-modal single-cell data Genome Biology, 21(1), 1-17

A BibTeX entry for LaTeX users is

  @Article{,
    title = {MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data.},
    author = {Ricard Argelaguet and Damien Arnol and Danila Bredikhin and Yonatan Deloro and Britta Velten and John C Marioni and Oliver Stegle},
    year = {2020},
    journal = {Genome Biology},
    doi = {10.1186/s13059-020-02015-1},
    volume = {21},
  }

  Velten, Braunger, Arnol, Argelaguet and Stegle: Identifying temporal
  and spatial patterns of variation from multi-modal data using MEFISTO
  bioRxiv 2020

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Identifying temporal and spatial patterns of variation from multi-modal data using MEFISTO.},
    author = {Britta Velten and Jana M. Braunger and Damien Arnol and Ricard Argelaguet and Oliver Stegle},
    year = {2020},
    journal = {bioRxiv},
    doi = {10.1101/2020.11.03.366674},
  }