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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "MOFA2" in publications use:'
type: software
title: 'MOFA2: Multi-Omics Factor Analysis v2'
version: 1.15.0
doi: 10.15252/msb.20178124
abstract: The MOFA2 package contains a collection of tools for training and analysing
  multi-omic factor analysis (MOFA). MOFA is a probabilistic factor model that aims
  to identify principal axes of variation from data sets that can comprise multiple
  omic layers and/or groups of samples. Additional time or space information on the
  samples can be incorporated using the MEFISTO framework, which is part of MOFA2.
  Downstream analysis functions to inspect molecular features underlying each factor,
  vizualisation, imputation etc are available.
authors:
- family-names: Argelaguet
  given-names: Ricard
  email: ricard.argelaguet@gmail.com
  orcid: https://orcid.org/0000-0003-3199-3722
- family-names: Arnol
  given-names: Damien
  email: damien.arnol@gmail.com
  orcid: https://orcid.org/0000-0003-2462-534X
- family-names: Bredikhin
  given-names: Danila
  email: danila.bredikhin@embl.de
  orcid: https://orcid.org/0000-0001-8089-6983
- family-names: Velten
  given-names: Britta
  email: britta.velten@gmail.com
  orcid: https://orcid.org/0000-0002-8397-3515
preferred-citation:
  type: article
  title: Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics
    data sets
  authors:
  - family-names: Argelaguet
    given-names: Ricard
    email: ricard.argelaguet@gmail.com
    orcid: https://orcid.org/0000-0003-3199-3722
  - family-names: Velten
    given-names: Britta
    email: britta.velten@gmail.com
    orcid: https://orcid.org/0000-0002-8397-3515
  - family-names: Arnol
    given-names: Damien
    email: damien.arnol@gmail.com
    orcid: https://orcid.org/0000-0003-2462-534X
  - family-names: Dietrich
    given-names: Sascha
  - family-names: Zenz
    given-names: Thorsten
  - family-names: Marioni
    given-names: John C
  - family-names: Buettner
    given-names: Florian
  - family-names: Huber
    given-names: Wolfgang
  - family-names: Stegle
    given-names: Oliver
  year: '2018'
  journal: Molecular Systems Biology
  doi: 10.15252/msb.20178124
  volume: '14'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/bioFAM/MOFA2
url: https://biofam.github.io/MOFA2/index.html
date-released: '2023-01-12'
contact:
- family-names: Argelaguet
  given-names: Ricard
  email: ricard.argelaguet@gmail.com
  orcid: https://orcid.org/0000-0003-3199-3722
references:
- type: article
  title: 'MOFA+: a statistical framework for comprehensive integration of multi-modal
    single-cell data.'
  authors:
  - family-names: Argelaguet
    given-names: Ricard
  - family-names: Arnol
    given-names: Damien
  - family-names: Bredikhin
    given-names: Danila
  - family-names: Deloro
    given-names: Yonatan
  - family-names: Velten
    given-names: Britta
  - family-names: Marioni
    given-names: John C
  - family-names: Stegle
    given-names: Oliver
  year: '2020'
  journal: Genome Biology
  doi: 10.1186/s13059-020-02015-1
  volume: '21'
- type: article
  title: Identifying temporal and spatial patterns of variation from multi-modal data
    using MEFISTO.
  authors:
  - family-names: Velten
    given-names: Britta
  - family-names: Braunger
    given-names: Jana M.
  - family-names: Arnol
    given-names: Damien
  - family-names: Argelaguet
    given-names: Ricard
  - family-names: Stegle
    given-names: Oliver
  year: '2020'
  journal: bioRxiv
  doi: 10.1101/2020.11.03.366674