To cite package ‘MIRA’ in publications use:

  Lawson JT, Tomazou EM, Bock C, Sheffield NC (2018). “MIRA: An R
  package for DNA methylation-based inference of regulatory activity.”
  _Bioinformatics_. R package version 1.27.0,
  <http://code.databio.org/MIRA>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{MIRA}: An R package for DNA methylation-based inference of regulatory activity},
    author = {John T Lawson and Eleni M Tomazou and Christoph Bock and Nathan C Sheffield},
    journal = {Bioinformatics},
    year = {2018},
    note = {R package version 1.27.0},
    url = {http://code.databio.org/MIRA},
  }