Package: MEDIPS
Type: Package
Title: DNA IP-seq data analysis
Version: 1.65.0
Date: 2020-02-15
Author: Lukas Chavez, Matthias Lienhard, Joern Dietrich, Isaac Lopez
        Moyado
Maintainer: Lukas Chavez <lukaschavez@ucsd.edu>
Description: MEDIPS was developed for analyzing data derived from
        methylated DNA immunoprecipitation (MeDIP) experiments followed
        by sequencing (MeDIP-seq). However, MEDIPS provides
        functionalities for the analysis of any kind of quantitative
        sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others)
        including calculation of differential coverage between groups
        of samples and saturation and correlation analysis.
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 3.0), BSgenome, Rsamtools
Imports: GenomicRanges, Biostrings, graphics, gtools, IRanges, methods,
        stats, utils, edgeR, DNAcopy, biomaRt, rtracklayer,
        preprocessCore
Suggests: BSgenome.Hsapiens.UCSC.hg19, MEDIPSData, BiocStyle
biocViews: DNAMethylation, CpGIsland, DifferentialExpression,
        Sequencing, ChIPSeq, Preprocessing, QualityControl,
        Visualization, Microarray, Genetics, Coverage,
        GenomeAnnotation, CopyNumberVariation, SequenceMatching
NeedsCompilation: no
Packaged: 2026-07-05 00:07:37 UTC; root
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:34:58 UTC
RemoteUrl: https://github.com/bioc/MEDIPS
RemoteRef: HEAD
RemoteSha: ffde1fc53565794733a17fa30837d021fe36caf6