Package: MBECS Title: Evaluation and correction of batch effects in microbiome data-sets Version: 1.17.0 Authors@R: person(given = "Michael", family = "Olbrich", role = c("aut", "cre"), email = "M.Olbrich@protonmail.com", comment = c(ORCID = "0000-0003-2789-3382")) Description: The Microbiome Batch Effect Correction Suite (MBECS) provides a set of functions to evaluate and mitigate unwated noise due to processing in batches. To that end it incorporates a host of batch correcting algorithms (BECA) from various packages. In addition it offers a correction and reporting pipeline that provides a preliminary look at the characteristics of a data-set before and after correcting for batch effects. biocViews: BatchEffect, Microbiome, ReportWriting, Visualization, Normalization, QualityControl URL: https://github.com/rmolbrich/MBECS BugReports: https://github.com/rmolbrich/MBECS/issues/new License: Artistic-2.0 Encoding: UTF-8 LazyData: false RoxygenNote: 7.2.3 Imports: methods, magrittr, phyloseq, limma, lme4, lmerTest, pheatmap, rmarkdown, cluster, dplyr, ggplot2, gridExtra, ruv, sva, tibble, tidyr, vegan, stats, utils, Matrix Suggests: knitr, markdown, BiocStyle, testthat (>= 3.0.0) Depends: R (>= 4.1) Collate: 'MBECS-package.R' 'data.R' 'mbecs_classes.R' 'mbecs_analyses.R' 'mbecs_corrections.R' 'mbecs_helper.R' 'mbecs_plots.R' 'mbecs_reports.R' VignetteBuilder: knitr Config/testthat/edition: 3 Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 12:57:55 UTC RemoteUrl: https://github.com/bioc/MBECS RemoteRef: HEAD RemoteSha: 87f397a1ddbc8665aa14b39750e742d7fe5f2d1d NeedsCompilation: no Packaged: 2026-07-05 05:08:59 UTC; root Author: Michael Olbrich [aut, cre] (ORCID: ) Maintainer: Michael Olbrich