NEWS

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MANOR 1.75.2

• Replace calls to 'class' by calls to 'inherits'.

MANOR 1.75.1

• Fix minor issues in .Rd files.

MANOR 1.59.5

• Merge inst/NEWS to NEWS.md

MANOR 1.59.4

• Update broken links in vignette.

• Update broken links in vignette.

• Add BugReports link.

• Add missing dependencies 'rmarkdown' and 'bookdown' to Suggests.

MANOR 1.59.3

• Package undeprecated by the Bioconductor maintainers.

MANOR 1.59.2

• Turned old .Rnw vignette to .Rmd vignette.

• GLAD no more listed in Depends (only in Imports).

• Moved to UTF-8 encoding (to cope with French accents).

• Updated maintainer email address.

• Fixed "register native routines and to disable symbol search".

• Use R's RNG instead of the one from the system in C code.

MANOR 1.37.2 (2014-10-01)

• Removed unused C functions for I/O in 'lib_io'.

MANOR 1.37.1 (2014-10-01)

• Minor changes to C code to avoid WARNINGS upon R CMD check.

• Changed 'par' settings in vignette to avoid 'Figure margins too large' errors.

MANOR 1.33.1 (2013-07-03)

• Replaced calls to 'exit', 'fprintf' which now raise a WARNING upon check.

• Iteration index not printed anymore in 'nem' (raised an error when compiling the vignette).

MANOR 1.23.3 (2011-03-18)

• Updated calls to 'GLAD:::daglad' in the vignette to fix an error caused by changes in the defaults of 'daglad'.

MANOR 1.21.1 (2010-10-01)

• Cleaned 'data/flags.RData" which contained objects from an old 'globalenv'.

• Updated maintainer's email address.

MANOR 1.19.1 (2010-01-24)

• Added (back) 'intensity.flag' to 'data/flags.RData' (had been removed since v 1.12.0 for an unknown reason).

MANOR 1.15.4 (2009-01-15)

• misplaced alignment tab in man/spatial.Rd.

MANOR 1.15.3 (2009-01-13)

• updated references in .Rd files.

• fixed warnings due to incorrect use of \item in .Rd files.

MANOR 1.15.2 (2009-01-06)

• 'norm' and 'sort' are now S3 methods as well

MANOR 1.15.1 (2009-01-04)

• (almost) one file per function in R/

• removed empty section \details in man/qscore.Rd

• added a NAMESPACE

• removed inst/doc/Makefile (not needed anymore because no html output required)

• removed another non-standard keyword

• only one keyword per \keyword entry...

MANOR 1.15.0 (2008-12-31)

• now use standard "keyword"s

• changed \link{\code{stuff}} into \code{\link{stuff}}

• filled in "keyword" sections in .Rd files.

• removed empty "examples" sections from .Rd files.

• initialized a few variables upon declaration in C code to prevent warnings in R CMD CHECK.

MANOR 1.13.2 (2008-09-23)

• modification de la fonction cv pour retourner NA lorsque toutes la valeurs du vecteur sont à NA

• modification de la function getChromosomeArm pour que cytoband ne soit pas positionnée à NULL

MANOR 1.13.1 (2008-09-04)

• added a CHANGELOG

• updated outdated reference in the .bib file

• changed the definition of flag "rep.flag" to avoid the error now caused by sd(NA, na.rm=TRUE)