Update broken links in vignette.
Update broken links in vignette.
Add BugReports link.
Add missing dependencies 'rmarkdown' and 'bookdown' to Suggests.
Turned old .Rnw vignette to .Rmd vignette.
GLAD no more listed in Depends (only in Imports).
Moved to UTF-8 encoding (to cope with French accents).
Updated maintainer email address.
Fixed "register native routines and to disable symbol search".
Use R's RNG instead of the one from the system in C code.
Minor changes to C code to avoid WARNINGS upon R CMD check.
Changed 'par' settings in vignette to avoid 'Figure margins too large' errors.
Replaced calls to 'exit', 'fprintf' which now raise a WARNING upon check.
Iteration index not printed anymore in 'nem' (raised an error when compiling the vignette).
Cleaned 'data/flags.RData" which contained objects from an old 'globalenv'.
Updated maintainer's email address.
updated references in .Rd files.
fixed warnings due to incorrect use of \item in .Rd files.
(almost) one file per function in R/
removed empty section \details in man/qscore.Rd
added a NAMESPACE
removed inst/doc/Makefile (not needed anymore because no html output required)
now use standard "keyword"s
changed \link{\code{stuff}} into \code{\link{stuff}}
filled in "keyword" sections in .Rd files.
removed empty "examples" sections from .Rd files.
initialized a few variables upon declaration in C code to prevent warnings in R CMD CHECK.
modification de la fonction cv pour retourner NA lorsque toutes la valeurs du vecteur sont à NA
modification de la function getChromosomeArm pour que cytoband ne soit pas positionnée à NULL
added a CHANGELOG
updated outdated reference in the .bib file
changed the definition of flag "rep.flag" to avoid the error now caused by sd(NA, na.rm=TRUE)