Package: LipidTrend
Title: LipidTrend: Analysis and Visualization of Lipid Feature
        Tendencies
Version: 1.3.1
Authors@R: c(
    person("Wei-Chung", "Cheng", email="chenglabomics@gmail.com", 
    role = c("aut","cre","cph"), comment = c(ORCID = "0000-0002-1229-4857")),
    person("Chia-Hsin ", "Liu", role = c("aut", "ctb")),
    person("Pei-Chun", "Shen", role = c("aut", "ctb")),
    person("Wen-Jen", "Lin", role = c("aut","ctb")),
    person("Hung-Ching", "Chang", role = c("aut","ctb")),
    person("Meng-Hsin", "Tsai", role = c("aut","ctb"))
    )
Description: "LipidTrend" is an R package that implements a
        permutation-based statistical test to identify significant
        differences in lipidomic features between groups. The test
        incorporates Gaussian kernel smoothing of region statistics to
        improve stability and accuracy, particularly when dealing with
        small sample sizes. This package also includes two plotting
        functions for visualizing significant tendencies in 1D and 2D
        feature data, respectively.
License: MIT + file LICENSE
URL: https://github.com/BioinfOMICS/LipidTrend
BugReports: https://github.com/BioinfOMICS/LipidTrend/issues
LazyData: FALSE
biocViews: Software, Lipidomics, StatisticalMethod,
        DifferentialExpression, Visualization
Depends: R (>= 4.5.0)
Imports: dplyr, ggnewscale, ggplot2, magrittr, methods, rlang,
        SummarizedExperiment, matrixTests
Suggests: BiocStyle, devtools, knitr, roxygen2, rmarkdown, testthat (>=
        3.0.0), S4Vectors,
Enhances: data.table,
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Collate: 'allClasses.R' 'allGenerics.R' 'analyzeLipidRegion.R' 'data.R'
        'globals.R' 'LipidTrend.R' 'plotRegion1D.R' 'plotRegion2D.R'
        'regionalTestFC.R' 'utils.R'
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-08 08:36:05 UTC
RemoteUrl: https://github.com/bioc/LipidTrend
RemoteRef: HEAD
RemoteSha: 49294b2a653ca85ef4d3108533fa0173ed89aa30
NeedsCompilation: no
Packaged: 2026-10-08 11:02:11 UTC; root
Author: Wei-Chung Cheng [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-1229-4857>),
  Chia-Hsin Liu [aut, ctb],
  Pei-Chun Shen [aut, ctb],
  Wen-Jen Lin [aut, ctb],
  Hung-Ching Chang [aut, ctb],
  Meng-Hsin Tsai [aut, ctb]
Maintainer: Wei-Chung Cheng <chenglabomics@gmail.com>