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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "LinTInd" in publications use:'
type: software
license: MIT
title: 'LinTInd: Lineage tracing by indels'
version: 1.9.0
doi: 10.32614/CRAN.package.LinTInd
abstract: When we combine gene-editing technology and sequencing technology, we need
  to reconstruct a lineage tree from alleles generated and calculate the similarity
  between each pair of groups. FindIndel() and IndelForm() function will help you
  align each read to reference sequence and generate scar form strings respectively.
  IndelIdents() function will help you to define a scar form for each cell or read.
  IndelPlot() function will help you to visualize the distribution of deletion and
  insertion. TagProcess() function will help you to extract indels for each cell or
  read. TagDist() function will help you to calculate the similarity between each
  pair of groups across the indwells they contain. BuildTree() function will help
  you to reconstruct a tree. PlotTree() function will help you to visualize the tree.
authors:
- family-names: Wang
  given-names: Luyue
  email: wly1995310@gmail.com
repository: https://bioc.r-universe.dev
commit: fb7ef03630eaa2bd655219f0faa31486c6bc8486
contact:
- family-names: Wang
  given-names: Luyue
  email: wly1995310@gmail.com