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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "LEA" in publications use:'
type: software
license: GPL-3.0-only
title: 'LEA: LEA: an R package for Landscape and Ecological Association Studies'
version: 3.17.1
abstract: LEA is an R package dedicated to population genomics, landscape genomics
  and genotype-environment association tests. LEA can run analyses of population structure
  and genome-wide tests for local adaptation, and also performs imputation of missing
  genotypes. The package includes statistical methods for estimating ancestry coefficients
  from large genotypic matrices and for evaluating the number of ancestral populations
  (snmf). It performs statistical tests using latent factor mixed models for identifying
  genetic polymorphisms that exhibit association with environmental gradients or phenotypic
  traits (lfmm2). In addition, LEA computes values of genetic offset statistics based
  on new or predicted environments (genetic.gap, genetic.offset). LEA is mainly based
  on optimized programs that can scale with the dimensions of large data sets.
authors:
- family-names: Frichot
  given-names: Eric
  email: olivier.francois@grenoble-inp.fr
- family-names: Francois
  given-names: Olivier
  email: eric.frichot@gmail.com
- family-names: Gain
  given-names: Clement
  email: clement.gain@univ-grenoble-alpes.fr
preferred-citation:
  type: article
  title: 'LEA: an R package for Landscape and Ecological Association studies'
  authors:
  - family-names: Frichot
    given-names: Eric
    email: olivier.francois@grenoble-inp.fr
  - family-names: Francois
    given-names: Olivier
    email: eric.frichot@gmail.com
  year: '2015'
  journal: Methods in Ecology and Evolution
  url: http://membres-timc.imag.fr/Olivier.Francois/lea.html
repository: https://bioc.r-universe.dev
url: http://membres-timc.imag.fr/Olivier.Francois/lea.html
date-released: '2024-07-10'
contact:
- family-names: Frichot
  given-names: Eric
  email: olivier.francois@grenoble-inp.fr
- family-names: Francois
  given-names: Olivier
  email: eric.frichot@gmail.com