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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "LACE" in publications use:'
type: software
title: 'LACE: Longitudinal Analysis of Cancer Evolution (LACE)'
version: 2.9.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.LACE
abstract: LACE is an algorithmic framework that processes single-cell somatic mutation
  profiles from cancer samples collected at different time points and in distinct
  experimental settings, to produce longitudinal models of cancer evolution. The approach
  solves a Boolean Matrix Factorization problem with phylogenetic constraints, by
  maximizing a weighed likelihood function computed on multiple time points.
authors:
- family-names: Ramazzotti
  given-names: Daniele
  email: daniele.ramazzotti@unimib.it
  orcid: https://orcid.org/0000-0002-6087-2666
- family-names: Angaroni
  given-names: Fabrizio
  email: fabrizio.angaroni@unimib.it
- family-names: Maspero
  given-names: Davide
  email: d.maspero@campus.unimib.it
- family-names: Graudenzi
  given-names: Alex
  email: alex.graudenzi@unimib.it
- family-names: De Sano
  given-names: Luca
  email: luca.desano@gmail.com
  orcid: https://orcid.org/0000-0002-9618-3774
- family-names: Ascolani
  given-names: Gianluca
  email: gianluca.ascolani@unimib.it
preferred-citation:
  type: article
  title: 'LACE: Inference of cancer evolution models from longitudinal single-cell
    sequencing data'
  authors:
  - family-names: D.
    given-names: Ramazzotti
  - family-names: F.
    given-names: Angaroni
  - family-names: D.
    given-names: Maspero
  - family-names: G.
    given-names: Ascolani
  - family-names: I.
    given-names: Castiglioni
  - family-names: R.
    given-names: Piazza
  - family-names: M.
    given-names: Antoniotti
  - family-names: A.
    given-names: Graudenzi
  journal: Journal of Computational Science
  year: '2022'
  volume: '58'
  url: https://www.sciencedirect.com/science/article/pii/S1877750321001848
  start: '101523'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BIMIB-DISCo/LACE
commit: b00996ca4da12a4db7fba174d23b5841b4689981
url: https://github.com/BIMIB-DISCo/LACE
date-released: '2024-09-20'
contact:
- family-names: Maspero
  given-names: Davide
  email: d.maspero@campus.unimib.it