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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "KnowSeq" in publications use:'
type: software
title: 'KnowSeq: KnowSeq R/Bioc package: The Smart Transcriptomic Pipeline'
version: 1.19.0
doi: 10.1016/j.compbiomed.2021.104387
abstract: KnowSeq proposes a novel methodology that comprises the most relevant steps
  in the Transcriptomic gene expression analysis. KnowSeq expects to serve as an integrative
  tool that allows to process and extract relevant biomarkers, as well as to assess
  them through a Machine Learning approaches. Finally, the last objective of KnowSeq
  is the biological knowledge extraction from the biomarkers (Gene Ontology enrichment,
  Pathway listing and Visualization and Evidences related to the addressed disease).
  Although the package allows analyzing all the data manually, the main strenght of
  KnowSeq is the possibilty of carrying out an automatic and intelligent HTML report
  that collect all the involved steps in one document. It is important to highligh
  that the pipeline is totally modular and flexible, hence it can be started from
  whichever of the different steps. KnowSeq expects to serve as a novel tool to help
  to the experts in the field to acquire robust knowledge and conclusions for the
  data and diseases to study.
authors:
- family-names: Castillo-Secilla
  given-names: Daniel
  email: cased@ugr.es
preferred-citation:
  type: article
  title: 'KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving
    relevant biological knowledge'
  authors:
  - family-names: Daniel
    given-names: Castillo-Secilla
  - family-names: Juan Manuel
    given-names: Galvez
  - family-names: Francisco
    given-names: Carrillo-Perez
  - family-names: Marta
    given-names: Verona-Almeida
  - family-names: Daniel
    given-names: Redondo-Sanchez
  - family-names: Francisco Manuel
    given-names: Ortuno
  - family-names: Luis Javier
    given-names: Herrera
  - family-names: Ignacio
    given-names: Rojas
  journal: Computers in Biology and Medicine
  year: '2021'
  volume: '133'
  doi: 10.1016/j.compbiomed.2021.104387
  start: '104387'
repository: https://bioc.r-universe.dev
contact:
- family-names: Castillo-Secilla
  given-names: Daniel
  email: cased@ugr.es