Package: KEGGemUP
Title: Creating, Rendering, and Mapping Omics Data on KEGG Pathway
        Graphs
Version: 0.99.1
Authors@R: 
    c(
        person(
            given = "Edoardo", family = "Filippi", role = c("aut"),
            email = "edoardo.filippi@uni-mainz.de", comment = c(ORCID = "0009-0003-9858-0137")
        ),
        person(
            given = "Myriam", family = "Meineck", role = c("ctb"),
            email = "Myriam.Meineck@unimedizin-mainz.de", comment = c(ORCID = "0000-0002-3243-2540")
        ),
        person(
            given = "Paul", family = "Classen", role = c("ctb"),
            email = "classenp@uni-mainz.de", comment = c(ORCID = "0000-0002-9410-0525")
        ),
        person(
            given = "Julia", family = "Weinmann-Menke", role = c("fnd"),
            email = "Julia.Weinmann-Menke@unimedizin-mainz.de", comment = c(ORCID = "0000-0001-7344-8381")
        ),
        person(
            given = "Federico", family = "Marini", role = c("aut", "cre"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: KEGGemUP retrieves and renders interactively KEGG pathway
        graphs. The retrieval makes full use of the caching
        functionality to avoid unnecessary download processes. The
        interactivity of the graph is warranted via the visNetwork
        interface to the vis.js library, fully supporting bindings to
        be used in Shiny for further operations.
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: Software, Pathways, KEGG, Network, Visualization,
        DifferentialExpression, GraphAndNetwork, Transcriptomics,
        Proteomics, Metabolomics, SystemsBiology
Roxygen: list(markdown = TRUE)
URL: https://github.com/imbeimainz/KEGGemUP
BugReports: https://github.com/imbeimainz/KEGGemUP/issues
Depends: R (>= 4.5.0)
Imports: BiocFileCache, httr2, ggplot2, rlang, methods, igraph, scales,
        KEGGREST, visNetwork, RColorBrewer, htmlwidgets, xml2,
        grDevices, stats, tools, utils
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-10 15:41:04 UTC
RemoteUrl: https://github.com/bioc/KEGGemUP
RemoteRef: HEAD
RemoteSha: b905e7ac43572f5573913e94b5c1b6233c239e2b
NeedsCompilation: no
Packaged: 2026-07-13 09:34:11 UTC; root
Author: Edoardo Filippi [aut] (ORCID: <https://orcid.org/0009-0003-9858-0137>),
  Myriam Meineck [ctb] (ORCID: <https://orcid.org/0000-0002-3243-2540>),
  Paul Classen [ctb] (ORCID: <https://orcid.org/0000-0002-9410-0525>),
  Julia Weinmann-Menke [fnd] (ORCID:
    <https://orcid.org/0000-0001-7344-8381>),
  Federico Marini [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>