Package: JohnsonKinaseData
Title: Kinase PWMs based on data published by Johnson et al. 2023 and
        Yaron-Barir et al. 2024
Version: 1.9.0
Date: 2023-09-24
Authors@R: 
    person("Florian", "Geier", , "florian.geier@unibas.ch", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-9076-9264"))
Description: The packages provides position specific weight matrices
        (PWMs) for 303 human serine/threonine and 93 tyrosine kinases
        originally published in Johnson et al. 2023
        (doi:10.1038/s41586-022-05575-3) and Yaron-Barir et al. 2024
        (doi:10.1038/s41586-024-07407-y). The package includes basic
        functionality to score user provided phosphosites. It also
        includes pre-computed PWM scores ("background scores") for a
        large collection of curated human phosphosites which can be
        used to rank PWM scores relative to the background scores
        ("percentile rank").
License: MIT + file LICENSE
URL: https://github.com/fgeier/JohnsonKinaseData/
BugReports: https://support.bioconductor.org/t/JohnsonKinaseData
Imports: ExperimentHub, BiocParallel, checkmate, dplyr, stats, stringr,
        tidyr, purrr, utils
Suggests: knitr, BiocStyle, ExperimentHubData, testthat (>= 3.0.0),
        rmarkdown
biocViews: ExperimentHub, Homo_sapiens_Data, Proteome
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:31 UTC
RemoteUrl: https://github.com/bioc/JohnsonKinaseData
RemoteRef: HEAD
RemoteSha: 2675c64c976ba1b6e79defc8e2dca8196f9da7bc
NeedsCompilation: no
Packaged: 2026-10-10 10:47:08 UTC; root
Author: Florian Geier [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9076-9264>)
Maintainer: Florian Geier <florian.geier@unibas.ch>
Depends: R (>= 4.1.0)