Package 'JASPAR2014'

Data package for JASPAR 2014

Description

Data package for JASPAR 2014. To search this databases, please use th e package TFBSTools.

Details

Package:	JASPAR2014
Version:	0.99.2
Date:	2013-10-07
Depends:	R (>= 3.0.1), methods, Biostrings (>= 2.29.19)
License:	GPL-2
URL:	http://jaspardev.genereg.net/
Type:	Package
NeedsCompilation:	no
LazyData:	yes

Author(s)

Ge Tan <[email protected]>

Maintainer: Ge Tan <[email protected]>

References

See http://jaspardev.genereg.net/ for more details about JASPAR.

Examples

## load the library
library(JASPAR2014)
## list the contents that are loaded into memory
ls("package:JASPAR2014")

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JASPAR2014 object

Description

The JASPAR2014 object class is a thin class for storing the path of JASPAR2014 style SQLite file.

Slots

db:

Object of class "character": a character string of the path of SQLite file.

Author(s)

Ge Tan

See Also

JASPAR2014SitesSeqs,

Examples

## Not run: 
    library(JASPAR2014)
    JASPAR2014
  
## End(Not run)

---

Sites sequences

Description

A list of DNAStringSet storing transcription factor binding sites sequences from JASPAR 2014 release with JASPAR IDs as names

Source

http://jaspar.binf.ku.dk/html/DOWNLOAD/sites/

Examples

## Not run: 
    library(JASPAR2014)
    JASPAR2014SitesSeqs
  
## End(Not run)

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