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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "IsoformSwitchAnalyzeR" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Isoform Switches with
  Functional Consequences from both short- and long-read RNA-seq data'
version: 2.5.0
doi: 10.1158/1541-7786.MCR-16-0459
abstract: Analysis of alternative splicing and isoform switches with predicted functional
  consequences (e.g. gain/loss of protein domains etc.) from quantification of all
  types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff
  etc.
authors:
- family-names: Vitting-Seerup
  given-names: Kristoffer
  email: k.vitting.seerup@gmail.com
  orcid: https://orcid.org/0000-0002-6450-0608
preferred-citation:
  type: article
  title: The Landscape of Isoform Switches in Human Cancers
  authors:
  - family-names: Vitting-Seerup
    given-names: Kristoffer
    email: k.vitting.seerup@gmail.com
    orcid: https://orcid.org/0000-0002-6450-0608
  - family-names: Sandelin
    given-names: Albin
  journal: Mol. Cancer Res
  year: '2017'
  doi: 10.1158/1541-7786.MCR-16-0459
  url: http://mcr.aacrjournals.org/content/early/2017/06/02/1541-7786.MCR-16-0459
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kvittingseerup/IsoformSwitchAnalyzeR
url: http://bioconductor.org/packages/IsoformSwitchAnalyzeR/
contact:
- family-names: Vitting-Seerup
  given-names: Kristoffer
  email: k.vitting.seerup@gmail.com
  orcid: https://orcid.org/0000-0002-6450-0608
references:
- type: article
  title: 'IsoformSwitchAnalyzeR: Analysis of changes in genome-wide patterns of alternative
    splicing and its functional consequences'
  authors:
  - family-names: Vitting-Seerup
    given-names: Kristoffer
  - family-names: Sandelin
    given-names: Albin
  journal: Bioinformatics
  year: '2019'
  doi: 10.1093/bioinformatics/btz247
  url: http://dx.doi.org/10.1093/bioinformatics/btz247