Changes in version 0.99.3                        

  - Added GitHub URL and BugReports metadata for Bioconductor
    submission.
  - Added an explicit AI-assisted development/provenance disclosure and
    source-code provenance comments.
  - Replaced the vignette author placeholder with the package maintainer
    name.
  - Updated the README for the public GitHub repository and submission
    stage.
  - No changes to the partitioning, scoring, inference, ranking, or
    resampling algorithms.

                       Changes in version 0.99.2                        

  - Added runnable examples for all exported functions.
  - Scoped RNG seeding locally to preserve deterministic numerical
    results without altering the caller's global RNG state.
  - Updated the R dependency for Bioconductor 3.24 development.
  - Expanded the vignette with required Introduction, Installation,
    labeled code chunks, references, and session information.
  - Added the utils::head namespace import identified by R CMD check.
  - No changes to the partitioning, scoring, inference, ranking, or
    resampling algorithms.

                       Changes in version 0.99.1                        

  - Fixed Bioconductor metadata access: global SummarizedExperiment
    metadata is accessed through S4Vectors::metadata(), where the
    accessor is defined.
  - Simplified NAMESPACE because Bioconductor accessors are called with
    explicit namespace qualification.
  - No changes to the numerical algorithms.

                       Changes in version 0.99.0                        

  - Initial Bioconductor-oriented package implementation of the
    IntrinsicScan method.
  - Matrix, SummarizedExperiment, and ExpressionSet inputs.
  - SummarizedExperiment output with ranked feature statistics and
    optional state assay.
  - Exact-J inference, optional stability, and fixed-partition
    permutation calibration preserved.