To cite package ‘InteractionSet’ in publications use:

  Lun ATL, Perry M and Ing-Simmons E (2016). Infrastructure for genomic
  interactions: Bioconductor classes for Hi-C, ChIA-PET and related
  experiments. F1000Res. 5, 950

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Aaron T L Lun and Malcolm Perry and Elizabeth Ing-Simmons},
    title = {Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments},
    journal = {F1000Res.},
    year = {2016},
    volume = {5},
    pages = {950},
  }