To cite package ‘InTAD’ in publications use:

  Okonechnikov, K., Erkek, S., Korbel, J.O., Pfister, S.M. and Chavez,
  L., 2019. InTAD: chromosome conformation guided analysis of enhancer
  target genes. BMC Bioinformatics, 20(1), p.60.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {InTAD: chromosome conformation guided analysis of enhancer target genes},
    author = {Konstantin Okonechnikov and Serap Erkek and Jan O. Korbel and Stefan M. Pfister and Lukas Chavez},
    year = {2019},
    journal = {BMC bioinformatics},
    doi = {10.1186/s12859-019-2655-2},
    volume = {20},
    issue = {1},
    pages = {60},
  }