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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "InTAD" in publications use:'
type: software
title: 'InTAD: Search for correlation between epigenetic signals and gene expression
  in TADs'
version: 1.25.0
doi: 10.1186/s12859-019-2655-2
abstract: The package is focused on the detection of correlation between expressed
  genes and selected epigenomic signals (i.e. enhancers obtained from ChIP-seq data)
  either within topologically associated domains (TADs) or between chromatin contact
  loop anchors. Various parameters can be controlled to investigate the influence
  of external factors and visualization plots are available for each analysis step.
authors:
- family-names: Okonechnikov
  given-names: Konstantin
  email: k.okonechnikov@gmail.com
- family-names: Erkek
  given-names: Serap
- family-names: Chavez
  given-names: Lukas
preferred-citation:
  type: article
  title: 'InTAD: chromosome conformation guided analysis of enhancer target genes'
  authors:
  - family-names: Okonechnikov
    given-names: Konstantin
    email: k.okonechnikov@gmail.com
  - family-names: Erkek
    given-names: Serap
  - family-names: Korbel
    given-names: Jan O.
  - family-names: Pfister
    given-names: Stefan M.
  - family-names: Chavez
    given-names: Lukas
  year: '2019'
  journal: BMC bioinformatics
  doi: 10.1186/s12859-019-2655-2
  volume: '20'
  issue: '1'
  start: '60'
repository: https://bioc.r-universe.dev
contact:
- family-names: Okonechnikov
  given-names: Konstantin
  email: k.okonechnikov@gmail.com