NEWS

---

IgGeneUsage 1.17

• model expanded for designs with biological replicates
• model expanded for paired sample designs (also with replicates)

IgGeneUsage 1.15

• model for gene usage (GU) analysis
• model for multi-condition analysis, ANOVA like

IgGeneUsage 1.12-1.13.2

• variable naming and function naming scheme changed
• paired-sample analysis stub created
• multinomial model in testing

IgGeneUsage 1.11.2-1.11.11 (2022-10-24)

• man files updated
• vignette updated
• d_zibb data and inst/scripts/d_zibb.R added: simulated data from zero-inflated beta-binomial (ZIBB) distribution
• minor fixes, function clarity/readibility improved
• probe compilation errors on Windows
• stanmodels used properly in v. 1.11.10, no extra compilation
• stanmodels in tests/ fixed, no extra compilation

IgGeneUsage 1.9.3 (2022-03-31)

• input data checks extended

IgGeneUsage 1.7.24 (2021-10-14)

• minor model update: top level hyperpriors on alpha gamma par. means not needed anymore. Compare inst/extdata/zibb.stan vs. inst/extdata/zibb_original.stan

IgGeneUsage 1.3.3 (2020-10-15)

• More flexible model for microbial sample analysis provided in inst folder, however, no interface is provided to it.

IgGeneUsage 1.1.6 (2020-04-01)

• Corresponding methodology published in Bioinformatics
• Speedup in posterior prediction

IgGeneUsage 0.99.0 (2019-07-15)

• Submitted to Bioconductor