# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "ISLET" in publications use:'
type: software
license: GPL-2.0-only
title: 'ISLET: Individual-Specific ceLl typE referencing Tool'
version: 1.7.0
doi: 10.1186/s13059-023-03014-8
abstract: ISLET is a method to conduct signal deconvolution for general -omics data.
  It can estimate the individual-specific and cell-type-specific reference panels,
  when there are multiple samples observed from each subject. It takes the input of
  the observed mixture data (feature by sample matrix), and the cell type mixture
  proportions (sample by cell type matrix), and the sample-to-subject information.
  It can solve for the reference panel on the individual-basis and conduct test to
  identify cell-type-specific differential expression (csDE) genes. It also improves
  estimated cell type mixture proportions by integrating personalized reference panels.
authors:
- family-names: Feng
  given-names: Hao
  email: hxf155@case.edu
  orcid: https://orcid.org/0000-0003-2243-9949
- family-names: Li
  given-names: Qian
  email: Qian.Li@STJUDE.ORG
- family-names: Meng
  given-names: Guanqun
  email: gxm324@case.edu
preferred-citation:
  type: article
  title: 'ISLET: individual-specific reference panel recovery improves cell-type-specific
    inference'
  authors:
  - family-names: Feng
    given-names: Hao
    email: hxf155@case.edu
    orcid: https://orcid.org/0000-0003-2243-9949
  - family-names: Meng
    given-names: Guanqun
    email: gxm324@case.edu
  - family-names: Lin
    given-names: Tong
  - family-names: Parikh
    given-names: Hemang
  - family-names: Pan
    given-names: Yue
  - family-names: Li
    given-names: Ziyi
  - family-names: Krischer
    given-names: Jeffrey
  - family-names: Li
    given-names: Qian
    email: Qian.Li@STJUDE.ORG
  year: '2023'
  journal: Genome Biology
  doi: 10.1186/s13059-023-03014-8
  volume: '24'
  start: '174'
repository: https://bioc.r-universe.dev
date-released: '2023-09-15'
contact:
- family-names: Feng
  given-names: Hao
  email: hxf155@case.edu
  orcid: https://orcid.org/0000-0003-2243-9949