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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HuMMANet" in publications use:'
type: software
license: MIT
title: 'HuMMANet: Curated Paired Human Microbiome-Metabolome Study Data'
version: 0.99.3
doi: 10.64898/2026.08.24.746727
identifiers:
- type: doi
  value: 10.32614/CRAN.package.HuMMANet
abstract: Provides access to curated paired human microbiome-metabolome study bundles
  available through Bioconductor ExperimentHub. The package organizes matched sample
  metadata, species abundance profiles, original and harmonized metabolite profiles,
  and study-specific annotation resources including metabolite identifier mappings,
  microbial producer annotations, disease associations, pathway annotations, and drug
  similarity matches. The resource is designed to support consistent and reproducible
  cross-study microbiome-metabolome analyses.
authors:
- family-names: Verma
  given-names: Shivangi
  email: shivangiv@iiitd.ac.in
  orcid: https://orcid.org/0009-0006-8505-0032
- family-names: Arora
  given-names: Nalin
  email: naa4050@med.cornell.edu
  orcid: https://orcid.org/0009-0009-1340-688X
- family-names: Mallick
  given-names: Himel
  email: him4004@med.cornell.edu
  orcid: https://orcid.org/0000-0003-4956-2429
- family-names: Ghosh
  given-names: Tarini Shankar
  email: tarini.ghosh@iiitd.ac.in
  orcid: https://orcid.org/0000-0001-9570-0365
preferred-citation:
  type: article
  title: 'HuMMANet: A Harmonized Cross-Study Resource for Integrative Analysis of
    Human Gut Microbiome Metabolome Associations'
  authors:
  - family-names: Verma
    given-names: Shivangi
    email: shivangiv@iiitd.ac.in
    orcid: https://orcid.org/0009-0006-8505-0032
  - family-names: Arora
    given-names: Nalin
    email: naa4050@med.cornell.edu
    orcid: https://orcid.org/0009-0009-1340-688X
  - family-names: Ajay
    given-names: Chandra Prakash
  - family-names: Singh
    given-names: Pankhuri
  - family-names: Mallick
    given-names: Himel
    email: him4004@med.cornell.edu
    orcid: https://orcid.org/0000-0003-4956-2429
  - family-names: Ghosh
    given-names: Tarini Shankar
    email: tarini.ghosh@iiitd.ac.in
    orcid: https://orcid.org/0000-0001-9570-0365
  journal: bioRxiv
  year: '2026'
  doi: 10.64898/2026.08.24.746727
  url: https://www.biorxiv.org/content/10.64898/2026.08.24.746727v1
  notes: Preprint
repository: https://bioc.r-universe.dev
repository-code: https://github.com/ShivangiV-IIITD/HuMMANet
commit: 88bea3d1bba03794a8b613a1a038672c30dd59ce
url: https://github.com/ShivangiV-IIITD/HuMMANet
date-released: '2026-09-16'
contact:
- family-names: Arora
  given-names: Nalin
  email: naa4050@med.cornell.edu
  orcid: https://orcid.org/0009-0009-1340-688X