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# CITATION file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "HicAggR" in publications use:'
type: software
license: MIT
title: 'HicAggR: Set of 3D genomic interaction analysis tools'
version: 1.1.2
abstract: This package provides a set of functions useful in the analysis of 3D genomic
  interactions. It includes the import of standard HiC data formats into R and HiC
  normalisation procedures. The main objective of this package is to improve the visualization
  and quantification of the analysis of HiC contacts through aggregation. The package
  allows to import 1D genomics data, such as peaks from ATACSeq, ChIPSeq, to create
  potential couples between features of interest under user-defined parameters such
  as distance between pairs of features of interest. It allows then the extraction
  of contact values from the HiC data for these couples and to perform Aggregated
  Peak Analysis (APA) for visualization, but also to compare normalized contact values
  between conditions. Overall the package allows to integrate 1D genomics data with
  3D genomics data, providing an easy access to HiC contact values.
authors:
- family-names: Tesfaye
  given-names: Robel
  email: rob.tesf@gmail.com
  orcid: https://orcid.org/0000-0003-2358-219X
- family-names: Depierre
  given-names: David
  email: dav.depierre@gmail.com
- family-names: Chanard
  given-names: Nicolas
  email: nico.chanard@gmail.com
- family-names: Schaak
  given-names: Stéphane
  email: stephane.schaak@inserm.fr
- family-names: Cuvier
  given-names: Olivier
  email: olivier.cuvier@univ-tlse3.fr
  orcid: https://orcid.org/0000-0003-0644-2734
repository: https://bioc.r-universe.dev
repository-code: https://github.com/CuvierLab/HicAggR
url: https://bioconductor.org/packages/HicAggR
contact:
- family-names: Cuvier
  given-names: Olivier
  email: olivier.cuvier@univ-tlse3.fr
  orcid: https://orcid.org/0000-0003-0644-2734
identifiers:
- type: url
  value: https://cuvierlab.github.io/HicAggR/