Package: HiTC
Type: Package
Title: High Throughput Chromosome Conformation Capture analysis
Description: The HiTC package was developed to explore high-throughput
        'C' data such as 5C or Hi-C. Dedicated R classes as well as
        standard methods for quality controls, normalization,
        visualization, and further analysis are also provided.
Version: 1.57.0
Date: 2025-07-22
Depends: R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports: Biostrings, graphics, grDevices, rtracklayer, RColorBrewer,
        Matrix, parallel, Seqinfo
Suggests: BiocStyle, HiCDataHumanIMR90, BSgenome.Hsapiens.UCSC.hg18
Author: Nicolas Servant
Maintainer: Nicolas Servant <nicolas.servant@curie.fr>
License: Artistic-2.0
Collate: AllGenerics.R HTCexp-class.R HTClist-class.R qualityControl.R
        mapC.R mapC_tracks.R binningC.R export.R import.R pca.R
        normalize_5C.R normalize_hiC.R tads.R deprecated.R
LazyLoad: yes
biocViews: Sequencing, HighThroughputSequencing, HiC
Packaged: 2026-06-04 07:10:10 UTC; root
InstallableEverywhere: yes
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:36:26 UTC
RemoteUrl: https://github.com/bioc/HiTC
RemoteRef: HEAD
RemoteSha: d00053906882154cd9b9cb94096ecf029ff6d932