Package: HiCool
Version: 1.13.1
Date: 2022-11-04
Title: HiCool
Authors@R: 
    person("Jacques", "Serizay", email="jacquesserizay@gmail.com",
        role=c("aut", "cre"))
Description: HiCool provides an R interface to process and normalize
        Hi-C paired-end fastq reads into .(m)cool files. .(m)cool is a
        compact, indexed HDF5 file format specifically tailored for
        efficiently storing HiC-based data. On top of processing fastq
        reads, HiCool provides a convenient reporting function to
        generate shareable reports summarizing Hi-C experiments and
        including quality controls.
License: MIT + file LICENSE
URL: https://github.com/js2264/HiCool
BugReports: https://github.com/js2264/HiCool/issues
Depends: R (>= 4.2), HiCExperiment
Imports: BiocIO, S4Vectors, GenomicRanges, IRanges, InteractionSet,
        vroom, basilisk.utils, basilisk, reticulate, rmarkdown,
        rmdformats, plotly, dplyr, stringr, sessioninfo, utils
Suggests: HiContacts, HiContactsData, AnnotationHub, BiocFileCache,
        BiocStyle, testthat, knitr, rmarkdown
biocViews: HiC, DNA3DStructure, DataImport
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Config/testthat/edition: 3
StagedInstall: no
Config/Bioconductor/UnsupportedPlatforms: windows
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-29 18:37:08 UTC
RemoteUrl: https://github.com/bioc/HiCool
RemoteRef: HEAD
RemoteSha: 3cffa64ad0dbb2b379ee9994259882e7f74a6b9a
NeedsCompilation: no
Packaged: 2026-07-04 09:29:34 UTC; root
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>