To cite package 'HiCcompare', please, use:

  Stansfield, John C.*, Kellen G. Cresswell, Vladimir I. Vladimirov,
  and Mikhail G. Dozmorov*. HiCcompare: An R-Package for Joint
  Normalization and Comparison of HI-C Datasets. BMC Bioinformatics 19,
  no. 1 (December 2018). https://doi.org/10.1186/s12859-018-2288-x

A BibTeX entry for LaTeX users is

  @Article{,
    title = {HiCcompare: an R-package for joint normalization and comparison of HI-C datasets},
    author = {John C. Stansfield and Kellen G. Cresswell and Vladimir I. Vladimirov and Mikhail G. Dozmorov},
    journal = {BMC Bioinformatics},
    year = {2018},
    volume = {19},
    number = {1},
    month = {Dec},
    url = {https://github.com/dozmorovlab/HiCcompare},
    doi = {10.1186/s12859-018-2288-x},
  }