NEWS

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HiCcompare 1.35.2 (2026-09-30)

• Build 'GInteractions' input tables from InteractionSet accessors instead of coercing S4 objects through 'data.table', restoring compatibility with Bioconductor 3.24.

HiCcompare 1.35.1 (2026-09-16)

• Fix conversion of 'GInteractions' inputs, resolving "no method for coercing this S4 class to a vector" errors.

HiCcompare 1.23.1 (2023-06-03)

• Fix cooler2sparse function when a cool file has only a single chromosome. Thanks to @junjunlab, @agata-sm, https://github.com/dozmorovlab/HiCcompare/issues/28
• Update cool file handling in the vignette.

HiCcompare 1.20.1 (2022-11-28)

• Use more secure HTTPS URL for Aiden Lab (PR #12 by @paulmenzel)

HiCcompare 1.11.1 (2020-08-14)

• Add CITATION, also to README.md file
• Update NEWS
• Update DESCRIPTION o Add Mikhail Dozmorov as Maintainer o Add URL and BugReports fields
• Revert breaking changes o KRnormalization.R, line 75, Z = rk/v; rho_km1 = t(rk) %*% Z; o hic_compare.R, line 99, A.min <- ceiling(mean(A_q10))

HiCcompare 1.11.0 (2020-02-11)

• New method to read in .cool files, cooler2bedpe()
• New method for comparison, hic_compare()