To cite HiCDCPlus in publications use:

  Merve Sahin et al. (2020). HiC-DC+: systematic 3D interaction calls
  and differential analysis for Hi-C and HiChIP. Nature Communications,
  12(3366), 1-11. URL https://doi.org/10.1038/s41467-021-23749-x.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C and HiChIP},
    author = {Merve Sahin and Wilfred Wong and Yingqian Zhan and Kinsey {Van Deynze} and Richard Koche and Christina S. Leslie},
    journal = {Nature Communications},
    year = {2021},
    volume = {12},
    number = {3366},
    pages = {1--11},
    url = {https://doi.org/10.1038/s41467-021-23749-x},
  }