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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HiCDCPlus" in publications use:'
type: software
license: GPL-3.0-only
title: 'HiCDCPlus: Hi-C Direct Caller Plus'
version: 1.13.0
abstract: Systematic 3D interaction calls and differential analysis for Hi-C and HiChIP.
  The HiC-DC+ (Hi-C/HiChIP direct caller plus) package enables principled statistical
  analysis of Hi-C and HiChIP data sets – including calling significant interactions
  within a single experiment and performing differential analysis between conditions
  given replicate experiments – to facilitate global integrative studies. HiC-DC+
  estimates significant interactions in a Hi-C or HiChIP experiment directly from
  the raw contact matrix for each chromosome up to a specified genomic distance, binned
  by uniform genomic intervals or restriction enzyme fragments, by training a background
  model to account for random polymer ligation and systematic sources of read count
  variation.
authors:
- family-names: Sahin
  given-names: Merve
  email: merve.sahn@gmail.com
  orcid: https://orcid.org/0000-0003-3858-8332
preferred-citation:
  type: article
  title: 'HiC-DC+: systematic 3D interaction calls and differential analysis for Hi-C
    and HiChIP'
  authors:
  - family-names: Sahin
    given-names: Merve
    email: merve.sahn@gmail.com
    orcid: https://orcid.org/0000-0003-3858-8332
  - family-names: Wong
    given-names: Wilfred
  - family-names: Zhan
    given-names: Yingqian
  - family-names: Van Deynze
    given-names: Kinsey
  - family-names: Koche
    given-names: Richard
  - family-names: Leslie
    given-names: Christina S.
  journal: Nature Communications
  year: '2021'
  volume: '12'
  issue: '3366'
  url: https://doi.org/10.1038/s41467-021-23749-x
  start: '1'
  end: '11'
repository: https://bioc.r-universe.dev
contact:
- family-names: Sahin
  given-names: Merve
  email: merve.sahn@gmail.com
  orcid: https://orcid.org/0000-0003-3858-8332