Package: HiBED
Type: Package
Title: HiBED
Version: 1.11.0
Authors@R: c(person("Ze", "Zhang", role = c("cre", "aut"),
            email = "ze.zhang.gr@dartmouth.edu", comment=c(ORCID="0000-0001-9854-5823")),
            person(c("Lucas", "A."), "Salas", role = c("aut"),
            email = "lucas.a.salas.diaz@dartmouth.edu"))
Description: Hierarchical deconvolution for extensive cell type
        resolution in the human brain using DNA methylation. The HiBED
        deconvolution estimates proportions up to 7 cell types
        (GABAergic neurons, glutamatergic neurons, astrocytes,
        microglial cells, oligodendrocytes, endothelial cells, and
        stromal cells) in bulk brain tissues.
License: GPL-3
Encoding: UTF-8
LazyData: false
VignetteBuilder: knitr
biocViews: ExperimentData, Homo_sapiens_Data, Tissue, MicroarrayData,
        Genome, MethylationArrayData, PackageTypeData
RoxygenNote: 7.2.3
URL: https://github.com/SalasLab/HiBED
Imports: dplyr, FlowSorted.Blood.EPIC, tibble, FlowSorted.DLPFC.450k,
        minfi, utils, AnnotationHub, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat,
        IlluminaHumanMethylation450kmanifest
BugReports: https://github.com/SalasLab/HiBED/issues.
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:36:51 UTC
RemoteUrl: https://github.com/bioc/HiBED
RemoteRef: HEAD
RemoteSha: 65a76d752b3dbda5787928d47f5ca542f2d931f8
NeedsCompilation: no
Packaged: 2026-10-10 10:45:46 UTC; root
Author: Ze Zhang [cre, aut] (ORCID: <https://orcid.org/0000-0001-9854-5823>),
  Lucas A. Salas [aut]
Maintainer: Ze Zhang <ze.zhang.gr@dartmouth.edu>
Depends: R (>= 3.5.0)