Package: HarmonizR
Title: Handles missing values and makes more data available
Version: 1.11.0
Authors@R: 
    c(person(given = "Simon",
             family = "Schlumbohm",
             role = c("aut", "cre"),
             email = "schlumbohm@hsu-hh.de"),
      person(given = "Julia",
             family = "Neumann",
             role = "aut"),
      person(given = "Philipp",
             family = "Neumann",
             role = "aut"))
Description: An implementation, which takes input data and makes it
        available for proper batch effect removal by ComBat or Limma.
        The implementation appropriately handles missing values by
        dissecting the input matrix into smaller matrices with
        sufficient data to feed the ComBat or limma algorithm. The
        adjusted data is returned to the user as a rebuild matrix. The
        implementation is meant to make as much data available as
        possible with minimal data loss.
Depends: R (>= 4.2.0)
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: BatchEffect
Imports: doParallel (>= 1.0.16), foreach (>= 1.5.1), janitor (>=
        2.1.0), plyr (>= 1.8.6), sva (>= 3.36.0), seriation (>= 1.3.5),
        limma (>= 3.46.0), SummarizedExperiment
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:14 UTC
RemoteUrl: https://github.com/bioc/HarmonizR
RemoteRef: HEAD
RemoteSha: c6ddbb0a1669705dc8b4565981ed0849a6a4ebbb
NeedsCompilation: no
Packaged: 2026-05-30 08:05:09 UTC; root
Author: Simon Schlumbohm [aut, cre],
  Julia Neumann [aut],
  Philipp Neumann [aut]
Maintainer: Simon Schlumbohm <schlumbohm@hsu-hh.de>