To cite the R package 'HTSFilter' in publications use:

A. Rau, M. Gallopin, G. Celeux, F. Jaffrezic (2013). Data-based filtering for replicated high-throughput transcriptome sequencing experiments. Bioinformatics 29(17): 2146-2152.<doi:10.1093/bioinformatics/btt350>.

Corresponding BibTeX entry:

  @Article{,
    title = {Data-based filtering for replicated high-throughput
      transcriptome sequencing experiments},
    year = {2013},
    journal = {Bioinformatics},
    volume = {29},
    number = {17},
    pages = {2146-2152},
    author = {Andrea Rau and Melina Gallopin and Gilles Celeux and
      Florence Jaffrezic},
  }