Changes in version 1.29 o Changes in version 1.29.1 + Update built-in data and internal gene name lookup table to v25.0 Changes in version 1.27 o Changes in version 1.27.1 + Rework hpaDownload for more resilience against changing APIs. + Update function documentations + Update built-in data and internal gene name lookup table to v24.0 + Small bug fixes. o Changes in version 1.27.2 + Update vignettes + Optimize package size + Better code comments on download and vis functions Changes in version 1.19 o Changes in version 1.19.0 + Starting devel for Bioconductor 3.18 o Changes in version 1.19.1 + Bug fix: Correct url for rna_tissue_consensus Changes in version 1.17 o Changes in version 1.17.0 + Starting devel for Bioconductor 3.17 o Changes in version 1.17.1 + Update built-in data to version 22.0. o Changes in version 1.17.2 + Update HPA download to correctly download new version 22.0 data. + Update documentation. Changes in version 1.15 o Changes in version 1.15.1 + Update built-in data to HPA version 21.1. o Changes in version 1.15.0 + Starting devel for Bioconductor 3.16 Changes in version 1.13 o Changes in version 1.13.1 + Update built-in data to HPA version 21.0. o Changes in version 1.13.0 + Starting devel for Bioconductor 3.15 Changes in version 1.9 o Changes in version 1.9.5 + hpaVisTissue now plots all tissues by default + hpaDownload shortcuts for downloadList arg can now be combined + Bug fixes and performance improvements o Changes in version 1.9.4 + hpaVisPatho can now facet by cancers or genes + Vignettes update + Bug fixes and performance improvements o Changes in version 1.9.3 + Update the default color to be more accessible (based on viridis::magma) + Updated hpaSubset and hpaListParam to work properly with new data o Changes in version 1.9.2 + hpaDownload can now download every downloadable datasets from HPA. + Update built-in data to HPA version 20.1. o Changes in version 1.9.1 + Update built-in data to HPA version 20. o Changes in version 1.9.0 + Starting devel for Bioconductor 3.13 Changes in version 1.5 o Changes in version 1.5.3 + Update built-in data to HPA version 19. o Changes in version 1.5.2 + Minor bug fixes. o Changes in version 1.5.1 + Add documentation with pkgdown. Minor updates to documentation. + tidyr and readr dependencies have been replaced with base R solutions. + Importing data from hpar is no longer supported. + hpaDownload function was updated to correctly download data in HPA version 19. o Changes in version 1.5.0 + Starting devel for Bioconductor 3.10 Changes in version 1.4 o Changes in version 1.4.0 + Official relase in Bioconductor 3.10 Changes in version 1.3 o Changes in version 1.3.3 + Fix sn error introduced in version 1.3.2 where hpaVisPatho plotted incorrectly. + Added a vignette with codes for figures in the HPAanalyze manuscript. o Changes in version 1.3.2 + To reduce dependency, hpaVis now use gridExtra for multiple plots instead of cowplot + Removed dependency on reshape2 o Changes in version 1.3.1 + hpaExport is now supporting csv and tsv. + Support for JSON export is added via vignette. + Fix the error where hpaXmlGet give an error when curl is not installed. + Most functions with now take both HGNC gene names and ensemble ids. + hpaVisSubcell now allows user to choose reliability scores. + Removed dependency on magrittr o Changes in version 1.3.0 + Starting devel for Bioconductor 3.10 Changes in version 1.2 o Changes in version 1.2.0 + Official relase in Bioconductor 3.9 Changes in version 1.1 o Changes in version 1.1.5 + Reformatted NEWS file. o Changes in version 1.1.4 + Added the query vignette. o Changes in version 1.1.3 + Fixed issues where hpaVis and hpaXml give faulty output. + All hpaVis functions as well as hpaListParam and hpaSubset now use the bundled dataset by defauft if no data argument is specifed. + All hpaVis functions now have default for all of their arguments and will create a warning message when the defaults are used. + The in-depth vignette was rewritten, and new vignettes added for ease of use. + Updated the themes of hpaVis functions for better clarity. + Updated documentations. + Hex sticker is now available. o Changes in version 1.1.1 + HPAanalyze now uses openxlsx for hpaExport() instead of XLConnect. o Changes in version 1.1.0 + Starting devel for Bioconductor 3.9 Changes in version 1.0 o Changes in version 1.0.0 + Official relase in Bioconductor 3.8 Changes in version 0.99 o Changes in version 0.99.19 + Update CITATION o Changes in version 0.99.18 + Add 'journal' to CITATION + Add '+ file LICENSE' to DESCRIPTION o Changes in version 0.99.17 + Standardize the NEWS file + Add CITATION file o Changes in version 0.99.16 + Update License. Now use GPL-3 instead of MIT. o Changes in version 0.99.14 + Replace visType == 'all' in hpaVis() with identical(visType, 'all') + Replace extractType == 'all' in hpaXml() with identical(extractType, 'all') o Changes in version 0.99.13 + Fix example for hpaXml() (issue #5) + Update documentation for hpa_downloaded_histology_v18 dataset (issue #6) + Re-name R/data.R to R/hpa_downloaded_histology_v18.R (issue #7) + Cross-reference documentations (issues #8, #9) + Combining hpaListParam() and hpaSubset() on one man page (issue #10) o Changes in version 0.99.12 + Minor edit in hpaXml() function o Changes in version 0.99.11 + Add the hpaVis() function as an umbrella for the whole function family + Add the hpaXml() function as an umbrella for all XML extraction + Remove the ignore/ directory + Import individual functions for xml2 + Remove /dontrun{} on man pages + Modifications to hpaVis functions for better consistency + Updated the help files with details about output of each function o Changes in version 0.99.10 + Initital version reviewed by Bioconductor