Package: HDF5Array
Title: HDF5 datasets as array-like objects in R
Description: The HDF5Array package is an HDF5 backend for DelayedArray
        objects. It implements the HDF5Array, H5SparseMatrix,
        H5ADMatrix, and TENxMatrix classes, 4 convenient and
        memory-efficient array-like containers for representing and
        manipulating either: (1) a conventional (a.k.a. dense) HDF5
        dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale
        format), (3) the central matrix of an h5ad file (or any matrix
        in the /layers group), or (4) a 10x Genomics sparse matrix. All
        these containers are DelayedArray extensions and thus support
        all operations (delayed or block-processed) supported by
        DelayedArray objects.
biocViews: Infrastructure, DataRepresentation, DataImport, Sequencing,
        RNASeq, Coverage, Annotation, GenomeAnnotation, SingleCell,
        ImmunoOncology
URL: https://bioconductor.org/packages/HDF5Array
BugReports: https://github.com/Bioconductor/HDF5Array/issues
Version: 1.41.3
License: Artistic-2.0
Encoding: UTF-8
Authors@R: person("Hervé", "Pagès", role=c("aut", "cre"),
		  email="hpages.on.github@gmail.com",
		  comment=c(ORCID="0009-0002-8272-4522"))
Depends: R (>= 3.4), methods, SparseArray (>= 1.7.5), DelayedArray (>=
        0.39.4), h5mread (>= 1.3.3)
Imports: utils, stats, tools, Matrix, BiocGenerics (>= 0.59.12),
        S4Vectors, IRanges, S4Arrays (>= 1.1.1), rhdf5 (>= 2.57.10)
Suggests: BiocParallel, GenomicRanges, SummarizedExperiment (>=
        1.15.1), h5vcData, ExperimentHub, TENxBrainData, zellkonverter,
        GenomicFeatures, SingleCellExperiment, DelayedMatrixStats,
        genefilter, RSpectra, RUnit, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: utils.R h5utils.R HDF5ArraySeed-class.R HDF5Array-class.R
        ReshapedHDF5ArraySeed-class.R ReshapedHDF5Array-class.R
        dump-management.R writeHDF5Array.R
        saveHDF5SummarizedExperiment.R H5SparseMatrixSeed-class.R
        H5SparseMatrix-class.R H5ADMatrixSeed-class.R
        H5ADMatrix-class.R TENxMatrixSeed-class.R TENxMatrix-class.R
        writeTENxMatrix.R zzz.R
Config/pak/sysreqs: libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-27 01:40:22 UTC
RemoteUrl: https://github.com/bioc/HDF5Array
RemoteRef: HEAD
RemoteSha: c4132ae2db816faf0a8c93dd7fccb502aad92e5d
NeedsCompilation: no
Packaged: 2026-10-26 09:17:59 UTC; root
Author: Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>)
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>