Package: HCATonsilData
Title: Provide programmatic access to the tonsil cell atlas datasets
Version: 1.11.0
Authors@R: c(person("Ramon", "Massoni-Badosa", role = c("aut", "cre"),
                    email ="ramonmassoni@gmail.com",
                    comment = c(ORCID = "0000-0001-7115-8145")),
             person("Federico", "Marini", role = c("aut"),
                    email = "marinif@uni-mainz.de", 
                    comment = c(ORCID = "0000-0003-3252-7758")),
             person("Alan", "O'Callaghan", role = c("aut"),
                    email = "alan.ocallaghan@outlook.com"),
	           person("Helena L.", "Crowell", role=c("aut"),
	                  email="helena@crowell.eu", 
	                  comment = c(ORCID="0000-0002-4801-1767"))
             )
Description: This package provides access to the scRNA-seq, scATAC-seq,
        multiome, CITE-seq and spatial transcriptomics (Visium) data
        generated by the tonsil cell atlas in the context of the Human
        Cell Atlas (HCA). The data is provided via the Bioconductor
        project in the form of SingleCellExperiments. Additionally,
        information on the whole compendium of identified cell types is
        provided in form of a glossary.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: ExperimentHub, SingleCellExperiment, SpatialExperiment,
        HDF5Array, SummarizedExperiment, S4Vectors, htmltools,
        rmarkdown, base64enc, utils
Suggests: knitr, ggplot2, testthat (>= 3.0.0), scater, Seurat, Signac,
        zellkonverter, iSEE, ggspavis, kableExtra, BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/massonix/HCATonsilData
BugReports: https://github.com/massonix/HCATonsilData/issues
biocViews: SingleCellData, ExperimentData, RNASeqData, ExperimentHub,
        ExpressionData, SpatialData
Depends: R (>= 4.3.0)
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libpng-dev libuv1-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:01 UTC
RemoteUrl: https://github.com/bioc/HCATonsilData
RemoteRef: HEAD
RemoteSha: 5d3b6bc731953e8cc4be413337bc0bab1e000e37
NeedsCompilation: no
Packaged: 2026-10-10 10:46:27 UTC; root
Author: Ramon Massoni-Badosa [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7115-8145>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Alan O'Callaghan [aut],
  Helena L. Crowell [aut] (ORCID:
    <https://orcid.org/0000-0002-4801-1767>)
Maintainer: Ramon Massoni-Badosa <ramonmassoni@gmail.com>