To cite package ‘GraphExperiment’ in publications use:

  Almeida-Silva F, Van de Peer Y (2026). _GraphExperiment: S4 Class for
  Quantitative Data and Associated Networks_. R package version 1.1.1,
  <https://bioconductor.org/packages/GraphExperiment>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {GraphExperiment: S4 Class for Quantitative Data and Associated Networks},
    author = {Fabricio Almeida-Silva and Yves {Van de Peer}},
    year = {2026},
    note = {R package version 1.1.1},
    url = {https://bioconductor.org/packages/GraphExperiment},
  }