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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GraphExperiment" in publications use:'
type: software
license: GPL-3.0-only
title: 'GraphExperiment: S4 Class for Quantitative Data and Associated Networks'
version: 1.1.1
doi: 10.32614/CRAN.package.GraphExperiment
abstract: GraphExperiment provides users and developers with an S4 class that extends
  `SingleCellExperiment` by offering infrastructure to store and retrieve networks
  (`igraph` objects) representing how assay features and/or observations are associated
  with each other. The class was designed to store networks inferred from high-dimensional
  quantitative data, with feature-feature networks including gene coexpression networks
  (GCNs), gene regulatory networks (GRNs), and co-abundance networks (from proteomics
  and metabolomics), and observation-observation network including cell-cell distances,
  species-species relationships, and sample-sample similarities.
authors:
- family-names: Almeida-Silva
  given-names: Fabricio
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964
- family-names: Peer
  given-names: Yves
  name-particle: Van de
  email: yves.vandepeer@psb.vib-ugent.be
  orcid: https://orcid.org/0000-0003-4327-3730
repository: https://bioc.r-universe.dev
repository-code: https://github.com/almeidasilvaf/GraphExperiment
commit: 6ffe807211516f88cd77f75369998d2a41496776
url: https://support.bioconductor.org/tag/GraphExperiment
date-released: '2026-03-01'
contact:
- family-names: Almeida-Silva
  given-names: Fabricio
  email: fabricio_almeidasilva@hotmail.com
  orcid: https://orcid.org/0000-0002-5314-2964