GrafGen: classifying subpopulations of H. pylori genomes

Introduction

The GrafGen package is for classifying Helicobacter pylori genomes according to genetic distance from nine reference subpopulations. The main function is grafGen().

For more information please refer to the package user maunual and vignette.

Installation

To install from Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") 
BiocManager::install("GrafGen")