Package: GrafGen
Title: Classification of Helicobacter Pylori Genomes
Version: 1.9.0
Date: 2024-12-16
Authors@R: c(person(given="William", family="Wheeler", role=c("aut", "cre"),
                email="wheelerb@imsweb.com"),
            person(given="Difei", family="Wang", role="aut",
                email="difei.wang2@nih.gov"),
            person(given="Isaac", family="Zhao", role="aut"),
            person(given="Yumi", family="Jin", role="aut"),
            person(given="Charles", family="Rabkin", role="aut", 
                email="rabkinc@exchange.nih.gov"))
Imports: stats, utils, graphics, ggplot2, plotly, scales, RColorBrewer,
        dplyr, grDevices, GenomicRanges, shiny, cowplot, ggpubr,
        stringr, rlang
Depends: R (>= 4.3.0)
Suggests: knitr, rmarkdown, RUnit, BiocManager, BiocGenerics,
        BiocStyle, devtools
Description: To classify Helicobacter pylori genomes according to
        genetic distance from nine reference populations. The nine
        reference populations are hpgpAfrica, hpgpAfrica-distant,
        hpgpAfroamerica, hpgpEuroamerica, hpgpMediterranea, hpgpEurope,
        hpgpEurasia, hpgpAsia, and hpgpAklavik86-like. The vertex
        populations are Africa, Europe and Asia.
License: GPL-2
biocViews: Genetics, Software, GenomeAnnotation, Classification
NeedsCompilation: yes
BugReports: https://github.com/wheelerb/GrafGen/issues
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:37 UTC
RemoteUrl: https://github.com/bioc/GrafGen
RemoteRef: HEAD
RemoteSha: 12ab6340149b05f5d0170f2ac9050f37e7ec083a
Packaged: 2026-07-04 05:29:36 UTC; root
Author: William Wheeler [aut, cre],
  Difei Wang [aut],
  Isaac Zhao [aut],
  Yumi Jin [aut],
  Charles Rabkin [aut]
Maintainer: William Wheeler <wheelerb@imsweb.com>