Changes in version 2.6.0 o Fixed glimmaMA creating blank plots when gene annotation contains "gene" column Changes in version 2.0.0 o Brand new backend and API with major changes o Plots can now be embedded in html reports o Plots can now be saved o Data from gene annotation and counts can now be saved o Added many plot customisation options in MDS plot Changes in version 1.9.4 o Fixed tests for R4.0.0 o Fixed examples for limma voom (normlization argument is now normalize.method) Changes in version 1.6.0 o Added table to MDS plot. o Changed encoding of javascript data to be more compact o Fixed handling of top and gene.selection parameters in glMDSPlot Changes in version 1.3.0 o Added highlighting to bars in MDS plot. o Added interaction with table when clicking on points in MD plot. o Changed expressions to default to no transformation. o Changed default colours. o Changed style of table. o Changed size of highlighted points. Changes in version 1.2.0 o Added option to turn off internal cpm transform (transform=FALSE) in MD Plot. o Added gridlines to MD Plot. o Added enter to search on MD plot table search box. o Added sample.cols argument to MD Plot. o Added data.frame handling for groups argument in MDS plot. o Added option to not use counts argument. o Added option to not use anno argument. o Added glXYPloy for more general plotting. o Added option to use numerical value for "groups" in MD Plot. o Fixed multiple plots in same directory overwriting each other's data. o Fixed logical values in annotation breaking graphs. o Fixed numeric values not working for colours. Changes in version 1.1.0 o Added tables to MD Plot. Changes in version 1.0.0 o Bioconductor release version. Changes in version 0.99.4 o Added sample colours for MD plot. o Added DESeqResults method for glMDPlot Changes in version 0.99.3 o Imported p.adjust for relevant functions. Changes in version 0.99.2 o Added don't test cases for non-exported functions to pass checks. Changes in version 0.99.1 o Initial package creation.