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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GenomicPlot" in publications use:'
type: software
license: GPL-2.0-only
title: 'GenomicPlot: Plot profiles of next generation sequencing data in genomic features'
version: 1.3.4
abstract: Visualization of next generation sequencing (NGS) data is essential for
  interpreting high-throughput genomics experiment results. 'GenomicPlot' facilitates
  plotting of NGS data in various formats (bam, bed, wig and bigwig); both coverage
  and enrichment over input can be computed and displayed with respect to genomic
  features (such as UTR, CDS, enhancer), and user defined genomic loci or regions.
  Statistical tests on signal intensity within user defined regions of interest can
  be performed and represented as boxplots or bar graphs. Parallel processing is used
  to speed up computation on multicore platforms. In addition to genomic plots which
  is suitable for displaying of coverage of genomic DNA (such as ChIPseq data), metagenomic
  (without introns) plots can also be made for RNAseq or CLIPseq data as well.
authors:
- family-names: Pu
  given-names: Shuye
  email: shuye2009@gmail.com
  orcid: https://orcid.org/0000-0002-6664-8438
repository: https://bioc.r-universe.dev
repository-code: https://github.com/shuye2009/GenomicPlot
url: https://github.com/shuye2009/GenomicPlot
contact:
- family-names: Pu
  given-names: Shuye
  email: shuye2009@gmail.com
  orcid: https://orcid.org/0000-0002-6664-8438