NEWS

---

GenomicOZone 1.5.1

• Fixed a bug caused by a deprecated function sjstats::eta_sq(). + In 'MD_perform_zoning.R', function 'sjstats::eta_sq()' is deprecated. Use 'lsr::etaSquared()' instead. + In 'DESCRIPTION', removed 'sjstats' from 'Imports'; added 'lsr' into 'Imports'; removed 'GEOquery' from 'Suggests'. + No longer downloading the data from GEO in the vignettes. Added the data file in inst/extdata. The data is only used by the vignettes. + 'NAMESPACE' is re-auto-generated by Roxygen.

GenomicOZone 1.3.1

• Fixed a bug of always using Enssembl US server to annotate the genes.
• Updated the description in the DESCRIPTION file.
• Updated the citations.

GenomicOZone 0.99.9

• Added clutering method: Multi-channel weighted univariate clustering.
• In function MD.Chr.zoning.Granges(), if only using one core, stop calling parallel computing.
• Correct a bug in function MD.rank.statistic(). ANOVA requires every group has no less than 2 elements. If not, report p-value 1 directly.
• Fixed the mal-formated NEWS file.

GenomicOZone 0.99.8

• Solved problem connecting to GitHub and bioconductor git server.

GenomicOZone 0.99.7

• Solved problem connecting to GitHub and bioconductor git server.

GenomicOZone 0.99.6

• Solved problem connecting to GitHub and bioconductor git server.

GenomicOZone 0.99.5

• Solved problem connecting to GitHub and bioconductor git server.

GenomicOZone 0.99.4

• Modified R document files. + Corrected typos. + Replaceded "expression" with "activity", because not only expression can be analyzed, but also all kinds of gene activity. + Replaced the "GenomicOZone list" with "GenomicOZone object".

GenomicOZone 0.99.3

• Replaced c(1:nrow()) into seq_len(nrow()) to avoid potential issues.
• Modified the vignettes to avoid long lines in code chunks.
• Renamed parameter 'p.value.cutoff' with 'alpha'.
• Renamed parameter 'effect.size.rate' with 'min.effect.size'.
• Updated .bib files. Added missing citations. Removed duplicated citations.
• Replace all c(1:...) with seq_len().
• Replaced the \texttt in vignettes Rmd file with a correct format using "“".
• Replaced the \textit in vignettes Rmd file with a correct format using "**".
• Adjusted the image size in vignettes Rmd file.
• Updated R documents.

GenomicOZone 0.99.2

• Submitted on 2019-08-18
• Added joemsong as a coresponding auther to the submission.

GenomicOZone 0.99.1

• Submitted on 2019-08-17
• Reformatted the package for Bioconductor submission.

GenomicOZone 0.99.0

• Submitted on 2019-08-17
• Packed the completed package.