NEWS

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GenomicFiles 1.34

BUG FIXES

• (v 1.33.1) reduceRanges() supports 'files' as character vectors.

GenomicFiles 1.18.0

NEW FEATURES

• (v. 1.17.3) Add vcfFields,VcfStack-method.

GenomicFiles 1.6.0

BUG FIXES

• dimnames<- correctly updates dim names

MODIFICATIONS

• Defunct *FileViews classes

GenomicFiles 1.4.0

NEW FEATURES

• Add reduceFiles() and reduceRanges()
• Add 'algorithm' argument to summarizeOverlaps methods
• Add REDUCEsampler() from Martin

MODIFICATIONS

• Deprecate *FileViews classes
• Modify show() for GenomicFiles class
• Add 'Chunking' section to vignette
• Update vignette figures
• Change REDUCE default from '+' to 'c' for reduceByYield()

BUG FIXES

• Bug fix for reduceByRange,GenomicFiles-method

GenomicFiles 1.2.0

NEW FEATURES

• Add pack / unpack generics and methods.
• Add GenomicFiles class.
• Add reduceByFile / reduceByRange methods for GenomicFiles class that expect 'file' to be character and 'ranges' a GRanges.
• Move "yieldReduce" from Rsamtools to GenomicFiles and rename as "reduceByYield".
• Allow GRange or GRangesList as @rowData in GenomicFiles class.

MODIFICATIONS

• Remove unused .FileList, VCFFileViews and FaFileViews class.
• Add checks for 'summarize=FALSE' when REDUCER is used.
• Clean up vignette introduction.
• Change REDUCER() signature to single argument reguardless of the value of 'iterate'.
• Rework reduceByYield() arguments for consistency with other reduceBy* functions.

GenomicFiles 1.0.0

NEW FEATURES

• First release of GenomicFiles package.