# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "GenomicAlignments" in publications use:'
type: software
license: Artistic-2.0
title: 'GenomicAlignments: Representation and manipulation of short genomic alignments'
version: 1.41.0
doi: 10.1371/journal.pcbi.1003118
abstract: Provides efficient containers for storing and manipulating short genomic
  alignments (typically obtained by aligning short reads to a reference genome). This
  includes read counting, computing the coverage, junction detection, and working
  with the nucleotide content of the alignments.
authors:
- family-names: Pagès
  given-names: Hervé
  email: hpages.on.github@gmail.com
- family-names: Obenchain
  given-names: Valerie
- family-names: Morgan
  given-names: Martin
preferred-citation:
  type: article
  title: Software for Computing and Annotating Genomic Ranges
  authors:
  - family-names: Lawrence
    given-names: Michael
  - family-names: Huber
    given-names: Wolfgang
  - family-names: Pag\`es
    given-names: Herv\'e
  - family-names: Aboyoun
    given-names: Patrick
  - family-names: Carlson
    given-names: Marc
  - family-names: Gentleman
    given-names: Robert
  - family-names: Morgan
    given-names: Martin
  - family-names: Carey
    given-names: Vincent
  year: '2013'
  journal: PLoS Computational Biology
  volume: '9'
  issue: '8'
  doi: 10.1371/journal.pcbi.1003118
  url: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003118
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Bioconductor/GenomicAlignments
url: https://bioconductor.org/packages/GenomicAlignments
contact:
- family-names: Pagès
  given-names: Hervé
  email: hpages.on.github@gmail.com